Index

A

AmbiguousSpeciesError anchored (check_workflow.IgnoreRule attribute)

archive (fresh_fvsbc.calibration.Manifest attribute) as_record() (fresh_fvsbc.provenance.Provenance method)

B

ba_min (fresh_fvsbc.bundle.BundleDomain attribute) BC_TREFMT (in module fresh_fvsbc.treelist) BecCode (class in fresh_fvsbc.bec) BecCodeError becs (fresh_fvsbc.bundle.BundleDomain attribute) BLANK_SLOTS (in module fresh_fvsbc.keywords) BLOCK_BODIES (in module fresh_fvsbc.keywords) BLOCK_KEYWORDS (in module fresh_fvsbc.keywords) BODY_KEYWORDS (in module fresh_fvsbc.keywords)

branch (check_workflow.Phase attribute) build_dataset() (in module fresh_fvsbc.calibration) BuildError built_variants() (in module fresh_fvsbc.provenance) BundleBoundsError BundleDomain (class in fresh_fvsbc.bundle) BundleDomainError BundleError BundleParameter (class in fresh_fvsbc.bundle)

C

CALIBRATION_KEYWORDS (in module fresh_fvsbc.bundle) CalibrationBundle (class in fresh_fvsbc.bundle) CalibrationDataError CalibrationDataset (class in fresh_fvsbc.calibration) CASES_COLUMNS (in module fresh_fvsbc.outputs) check_changelog() (in module check_workflow) check_domain() (fresh_fvsbc.bundle.CalibrationBundle method) check_files() (in module check_workflow) check_llms() (in module check_workflow) check_markdown_links() (in module check_workflow) check_required_files() (in module check_workflow) check_roadmap() (in module check_workflow) check_run() (in module fresh_fvsbc.outputs)

check_workflow module checked (check_workflow.Task attribute) classes_for() (in module fresh_fvsbc.backtest) code (check_workflow.Diagnostic attribute) command (dashboard.Gate attribute) CommandInputError compare_rows() (in module fresh_fvsbc.backtest) CROWN_BY_CLASS (in module fresh_fvsbc.backtest) crown_class() (in module fresh_fvsbc.nemora) CROWN_CLASS_MIN (in module fresh_fvsbc.nemora) crown_percent() (in module fresh_fvsbc.nemora) CrownRatioError

D

dashboard module DATABASE_NAME (in module fresh_fvsbc.run) database_path() (in module fresh_fvsbc.run) DATABASE_TABLES (in module fresh_fvsbc.outputs)

dbh_classes (fresh_fvsbc.bundle.BundleDomain attribute) default_gates() (in module dashboard) Diagnostic (class in check_workflow) digest (fresh_fvsbc.keywords.KeywordSet property) directory_only (check_workflow.IgnoreRule attribute) DONOR_SPECIES (in module fresh_fvsbc.treelist)

E

ENVELOPE_FLAGS (in module fresh_fvsbc.envelope) envelope_flags() (in module fresh_fvsbc.envelope) error() (in module check_workflow) ERROR_COLUMNS (in module fresh_fvsbc.outputs) errors_in() (in module fresh_fvsbc.outputs)

ESTAB_KEYWORDS (in module fresh_fvsbc.keywords) EXIT_BAD_INPUT (in module fresh_fvsbc.cli) EXIT_FAILED_RUN (in module fresh_fvsbc.cli) EXIT_OK (in module fresh_fvsbc.cli) ExtensionUnavailableError

F

FIA_CODES (in module fresh_fvsbc.treelist) FIELD_DESCRIPTORS (in module fresh_fvsbc.treelist) FIELD_NAMES (in module fresh_fvsbc.treelist) FIELD_WIDTH (in module fresh_fvsbc.keywords) fields (fresh_fvsbc.bec.BecCode property) FieldWidthError FIRE_MODEL_ORDER_WARNING (in module fresh_fvsbc.keywords) FMIN_KEYWORDS (in module fresh_fvsbc.keywords) fresh_fvsbc module fresh_fvsbc.backtest module fresh_fvsbc.bec module fresh_fvsbc.bundle module fresh_fvsbc.calibration module fresh_fvsbc.cli module

fresh_fvsbc.envelope module fresh_fvsbc.keywords module fresh_fvsbc.nemora module fresh_fvsbc.outputs module fresh_fvsbc.provenance module fresh_fvsbc.run module fresh_fvsbc.treelist module from_cases() (in module fresh_fvsbc.provenance) from_fields() (fresh_fvsbc.bec.BecCode class method) from_record() (fresh_fvsbc.bundle.CalibrationBundle class method) FVS_SOURCE_COMMIT (in module fresh_fvsbc.provenance)

G

Gate (class in dashboard)

GateResult (class in dashboard)

I

IDENTITY_COLUMN (in module fresh_fvsbc.outputs) IgnoreRule (class in check_workflow) ingrowth_keyword() (fresh_fvsbc.bundle.CalibrationBundle method)

inputs (fresh_fvsbc.calibration.Manifest attribute) is_ignored() (in module check_workflow) issue (check_workflow.Task attribute) iter_text_files() (in module check_workflow)

J

JSP_CODES (in module fresh_fvsbc.treelist)

K

Keyword (class in fresh_fvsbc.keywords) KEYWORD_BLOCK_KEYWORDS (in module fresh_fvsbc.keywords) KEYWORD_FILE_NAME (in module fresh_fvsbc.run) keyword_object() (fresh_fvsbc.bundle.BundleParameter method) keyword_set_hash() (in module fresh_fvsbc.keywords) KEYWORD_TABLE (in module fresh_fvsbc.keywords)

KeywordConflictError KeywordOrderError KEYWORDS (in module fresh_fvsbc.keywords) keywords_for() (in module fresh_fvsbc.backtest) KeywordSet (class in fresh_fvsbc.keywords) KeywordWidthError

L

line (check_workflow.Diagnostic attribute) (check_workflow.Phase attribute) (check_workflow.Task attribute)

LINES_KEYWORDS (in module fresh_fvsbc.keywords) load_bundle() (in module fresh_fvsbc.bundle) load_envelope() (in module fresh_fvsbc.envelope) load_ignore_rules() (in module check_workflow)

M

main() (in module check_workflow) (in module dashboard) (in module fresh_fvsbc.cli) management (fresh_fvsbc.bundle.BundleDomain attribute) MANAGEMENT_REGIMES (in module fresh_fvsbc.bundle) Manifest (class in fresh_fvsbc.calibration) message (check_workflow.Diagnostic attribute) MissingAssignmentError MissingOutputError MISSPELLED_KEYWORD (in module fresh_fvsbc.keywords) MISTOE_KEYWORDS (in module fresh_fvsbc.keywords) module check_workflow dashboard fresh_fvsbc fresh_fvsbc.backtest fresh_fvsbc.bec fresh_fvsbc.bundle fresh_fvsbc.calibration fresh_fvsbc.cli fresh_fvsbc.envelope fresh_fvsbc.keywords fresh_fvsbc.nemora fresh_fvsbc.outputs fresh_fvsbc.provenance fresh_fvsbc.run fresh_fvsbc.treelist

N

name (dashboard.Gate attribute) (dashboard.GateResult attribute)

negated (check_workflow.IgnoreRule attribute) number (check_workflow.Phase attribute) (check_workflow.Task attribute)

O

ORACLE_TABLES (in module fresh_fvsbc.outputs)

OutputError overall_status() (in module dashboard)

P

parameters (fresh_fvsbc.calibration.Manifest attribute) parent (check_workflow.Phase attribute) parse() (fresh_fvsbc.bec.BecCode class method) parse_roadmap() (in module check_workflow) parse_tracker() (in module check_workflow) path (check_workflow.Diagnostic attribute) pattern (check_workflow.IgnoreRule attribute) phase (check_workflow.Task attribute) Phase (class in check_workflow)

PLANTS_SYMBOLS (in module fresh_fvsbc.treelist) PlotFields (class in fresh_fvsbc.nemora) PopulationError pretty (fresh_fvsbc.bec.BecCode property) Provenance (class in fresh_fvsbc.provenance) PROVENANCE_FILE_NAME (in module fresh_fvsbc.run) ProvenanceError psp_tree_records() (in module fresh_fvsbc.backtest) purpose (dashboard.Gate attribute) PYFVS_COMMIT (in module fresh_fvsbc.provenance)

Q

qmd_min (fresh_fvsbc.bundle.BundleDomain attribute)

R

RDIN_KEYWORDS (in module fresh_fvsbc.keywords) read_cases() (in module fresh_fvsbc.outputs) READ_COLUMNS (in module fresh_fvsbc.treelist) read_errors() (in module fresh_fvsbc.outputs) read_table() (in module fresh_fvsbc.outputs) record() (fresh_fvsbc.bundle.CalibrationBundle method) (in module dashboard) RECORD_KEYWORDS (in module fresh_fvsbc.keywords) RECORD_WIDTH (in module fresh_fvsbc.treelist) REFERENCE_VERIFIED (in module fresh_fvsbc.outputs) regions (fresh_fvsbc.bundle.BundleDomain attribute) REGIONS (in module fresh_fvsbc.bec) render() (check_workflow.Diagnostic method) (fresh_fvsbc.bundle.CalibrationBundle method) (fresh_fvsbc.keywords.KeywordSet method)

render_keyword() (in module fresh_fvsbc.keywords) render_keywords() (in module fresh_fvsbc.keywords) render_markdown() (in module dashboard) render_text() (in module dashboard) resolve_species() (in module fresh_fvsbc.treelist) returncode (dashboard.GateResult attribute) rows (fresh_fvsbc.calibration.Manifest attribute) run() (in module check_workflow) run_backtest() (in module fresh_fvsbc.backtest) run_case() (in module fresh_fvsbc.run) run_gate() (in module dashboard) run_gates() (in module dashboard) run_population() (in module fresh_fvsbc.run) RunError RunFailedError RunResult (class in fresh_fvsbc.run)

S

scan_repository() (in module check_workflow) scan_text() (in module check_workflow) seconds (dashboard.GateResult attribute) select_intervals() (in module fresh_fvsbc.backtest) severity (check_workflow.Diagnostic attribute) Severity (in module fresh_fvsbc.outputs) severity_of() (in module fresh_fvsbc.outputs) source (fresh_fvsbc.calibration.Manifest attribute) SPECIAL_KEYWORDS (in module fresh_fvsbc.keywords) SPECIES_ALIASES (in module fresh_fvsbc.backtest) species_crosswalk() (in module fresh_fvsbc.calibration) species_envelope() (in module fresh_fvsbc.calibration) species_groups (fresh_fvsbc.bundle.BundleDomain attribute)

SPECIES_GROUPS (in module fresh_fvsbc.calibration) SpeciesError STAND_KEYWORDS (in module fresh_fvsbc.keywords) STANDALONE_VERIFIED (in module fresh_fvsbc.outputs) status (check_workflow.Phase attribute) (dashboard.GateResult attribute) subtasks (check_workflow.Task attribute) SUBZONES (in module fresh_fvsbc.bec) summarise() (in module fresh_fvsbc.backtest) SUMMARY_FILE_NAME (in module fresh_fvsbc.run) summary_for_year() (in module fresh_fvsbc.backtest) SUPPLEMENTAL_KEYWORDS (in module fresh_fvsbc.keywords) supported_zones (fresh_fvsbc.calibration.Manifest attribute) SUPPORTED_ZONES (in module fresh_fvsbc.bec)

T

tail (dashboard.GateResult attribute) Task (class in check_workflow) tasks (check_workflow.Phase attribute) to_json() (fresh_fvsbc.provenance.Provenance method) to_tree_list() (in module fresh_fvsbc.nemora) tree_file_name() (in module fresh_fvsbc.run)

TREE_LIST_END (in module fresh_fvsbc.treelist) TREEFMT_LINES (in module fresh_fvsbc.run) treelist_format_lines() (in module fresh_fvsbc.run) treelist_hash() (in module fresh_fvsbc.provenance) TreeListFields (class in fresh_fvsbc.treelist) tsas (fresh_fvsbc.bundle.BundleDomain attribute)

U

UnknownKeywordError UnknownSpeciesError UnknownTableError

unsupported_zones (fresh_fvsbc.calibration.Manifest attribute) UNSUPPORTED_ZONES (in module fresh_fvsbc.bec) UnsupportedKeywordError

V

validate_keyword() (in module fresh_fvsbc.keywords)

validate_keywords() (in module fresh_fvsbc.keywords)

W

warning() (in module check_workflow) warnings_in() (in module fresh_fvsbc.outputs) with_tree_handoff() (in module fresh_fvsbc.run) write() (fresh_fvsbc.provenance.Provenance method)

WRITE_COLUMNS (in module fresh_fvsbc.treelist) write_tree_file() (in module fresh_fvsbc.treelist) write_tree_list() (in module fresh_fvsbc.treelist) write_tree_record() (in module fresh_fvsbc.treelist)