femic.pipeline.vdyp_stage

VDYP execution stage helpers for legacy notebook migration.

Functions

build_bootstrap_vdyp_results_runner(*, tsa, ...)	Build a zero-arg bootstrap callback for load_or_build_vdyp_results_tsa(...).
build_curve_fit_adapter(*[, curve_fit_impl, ...])	Build legacy-compatible curve_fit wrapper handling maxfev/max_nfev.
build_curve_smoothing_plot_config(*, sns_module)	Build and apply legacy curve-smoothing plot defaults.
build_fit_stratum_curves_runner(*, f_table, ...)	Build a compile-one callback that runs fit_stratum_curves(...) for one stratum.
build_run_vdyp_for_stratum_runner(*, tsa, ...)	Build a per-TSA VDYP runner callable for bootstrap dispatch helpers.
build_smoothed_curve_table(*, smoothed_runs, ...)	Build and optionally persist the smoothed VDYP curve table.
build_stratum_fit_run_config(*[, ...])	Build defaults for pre-VDYP stratum fit stage settings.
build_vdyp_batch_command(*, vdyp_binpath, ...)	Build legacy VDYP command text used for execution and logging metadata.
build_vdyp_run_context(*[, base_context, ...])	Build VDYP run context payload while preserving caller-provided values.
build_vdyp_run_event(*, status, phase, ...)	Build one VDYP run event payload with shared base fields.
collect_vdyp_batch_run_metadata(*, result, ...)	Collect subprocess/file metadata shared by parse-error and success events.
compile_strata_fit_results(*, strata_df, ...)	Compile fit payloads for each selected stratum index/code pair.
emit_vdyp_run_event(*, append_jsonl_fn, ...)	Emit one VDYP run event record through the provided append sink.
ensure_local_vdyp_runtime_assets(*, ...[, ...])	Ensure legacy relative VDYP runtime assets exist under local vdyp_io/.
execute_bootstrap_vdyp_runs(*, tsa, run_id, ...)	Execute bootstrap VDYP runs across stratum/SI combinations.
execute_curve_smoothing_runs(*, tsa, run_id, ...)	Build smoothed VDYP curves for each stratum/SI combination.
execute_vdyp_batch(*, feature_ids, vdyp_ply, ...)	Run one VDYP batch and return parsed per-feature output tables.
fit_stratum_curves(*, f_table, fit_func, ...)	Fit per-SI species curves for one stratum using legacy notebook logic.
load_or_build_vdyp_results_tsa(*, tsa, ...)	Resolve per-TSA VDYP results from cache, combined cache, or fresh bootstrap.
load_vdyp_input_tables(*, ...[, ...])	Load VDYP polygon/layer tables from feather cache or source geodatabase.
normalize_vdyp_run_event_counts(*, ...)	Normalize run-event count fields to integers in one shared seam.
plot_curve_overlays(*, results_for_tsa, ...)	Render legacy VDYP overlay plots for smoothed curves.
resolve_vdyp_batch_execution_dependencies(*, ...)	Resolve injected/default callable dependencies for VDYP batch execution.
resolve_vdyp_batch_temp_artifacts(*, ...)	Resolve temp-file basenames and full paths for VDYP batch processing.
run_vdyp_for_stratum(*, sample_table, tsa, ...)	Run VDYP for one stratum sample table with logging and sampling orchestration.
run_vdyp_sampling(*, sample_table, nsamples, ...)	Run legacy VDYP sampling flow (auto/all/fixed) for one stratum sample table.

Classes

CurveSmoothingPlotConfig(plot, figsize, ...)	Plot defaults for legacy VDYP curve-smoothing overlays.
SmoothedCurveResult(stratumi, stratum_code, ...)	One smoothed curve result for a stratum/SI combination.
StratumFitRunConfig(fit_rawdata, ...)	Defaults for pre-VDYP stratum curve-fit compilation runs.
VdypBatchExecutionDependencies(...)	Resolved callable dependencies used by execute_vdyp_batch(...).
VdypBatchTempArtifacts(vdyp_ply_csv, ...)	Resolved temp-file names and absolute paths for one VDYP batch run.
VdypRunEventCounts(feature_count, ...)	Normalized integer count fields shared by VDYP run events/headers.